CV

CV is best viewed as a PDF – Click Here – Joseph Guhlin – Updated: Aug 20 2017

Joseph Guhlin

140 Gortner Lab

1479 Gortner Avenue

St. Paul, MN, 55108

+1-469-867-2100

joseph.guhlin@gmail.comguhli007@umn.edu

CURRICULUM VITAE

EDUCATION

Ph.D. Student

University of Minnesota, Minneapolis, MN 2013 – present

Advisor: Dr. Peter Tiffin.

Degree expected spring 2017

B.S. Applied Plant Sciences 2013

University of Minnesota, Minneapolis, MN

EMPLOYMENT

University of Minnesota, Minneapolis, MN

Graduate Student in Plant & Microbial Biology 2013 – Current

University of Minnesota, Minneapolis, MN

Undergraduate Researcher in Dr. Nevin Young’s Lab 2012 – 2013

Minneapolis Community and Technical College, Minneapolis, MN 2009 – 2011

Microbiology and Biotechnology Lab Tech

Engram Nine Inc, Dallas, TX 2006 – 2010

Lead Programmer and Database Administrator

Independent Consulting 2000 – 2006

Computer Programmer and Unix Administrator

RESEARCH INTERESTS

Genomic architecture underlying complex quantitative traits, Plant breeding and related, Structural variants, QTL Mapping, Protein Interaction Networks, Machine learning applied to biological problems, Large database and dataset integration, Informatics & Statistics

TEACHING INTERESTS

Genetics, Botany, Plant Breeding, Biological Sciences, Genomics, Bioinformatics, Plant-Microbe Interaction

PUBLICATIONS

Joseph Guhlin, Kevin AT Silverstein, Peng Zhou, Shaun Curtin, Roxanne Denny, Nevin D. Young. (2017) ODG: A graph Database Generator for Omics Data. BMC bioinformatics.

Liana T. Burghardt, Joseph Guhlin, Chan Lan Chun, Junqi Liu, Michael J. Sadowsky, Robert M. Stupar, Nevin D. Young, Peter Tiffin. (2017) Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism. Molecular Ecology.

Peng Zhou, Kevin A. T. Silverstein, Thiruvarangan Ramaraj, Joseph Guhlin, Roxanne Denny, Junqi Liu, Andrew D. Farmer, Kelly P. Steele, Robert M. Stupar, Jason R. Miller, Peter Tiffin, Joann Mudge and Nevin D. Young. (2017). Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes. BMC Genomics.

Curtin, S. J., Tiffin, P., Guhlin, J., Trujillo, D. I., Burghardt, L. T., Atkins, P., Baltes, N. J., Denny, R., Voytas, D. F., Stupar, R. M., & Young, N. D. (2017). Validating Genome-Wide Association candidates through quantitative variation in nodulation. Plant Physiology, pp-01923.

Shamseldin, A., Nelson, M. S., Staley, C., Guhlin, J., & Sadowsky, M. J. (2016). Draft genome sequences of four novel thermal-and alkaline-tolerant Egyptian Rhizobium strains nodulating berseem clover. Genome Announcements, 4(5), e00988-16.

Zhou, P., Silverstein, K. A., Gao, L., Walton, J. D., Nallu, S., Guhlin, J., & Young, N. D. (2013). Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application). BMC bioinformatics14(1), 335.

SCIENTIFIC PRESENTATIONS

Medicago Genetics and Genomics Workshop 2016

Structural Variation and its Potential Role in Rhizobial Nodulation. Joseph Guhlin, P. Tiffin, N. D. Young

Plant Biology 2015, Minneapolis, MN 2015

Standing Variation in Copy-Number of Nodule Cysteine-Rich Peptides Plays a Role in Rhizobial Nodulation. Joseph Guhlin, K. AT Silverstein, P. Zhou, A.Farmer, P. Tiffin, N. D. Young

Plant Biological Sciences Retreat, Minneapolis, MN 2015

Genome Wide Association Study Using Copy-Number Variants in Medicago truncatula. Joseph Guhlin, K. AT Silverstein, P. Zhou, A.Farmer, P. Tiffin, N. D. Young

Plant and Animal Genome Conference, San Diego, CA 2015

Genome Wide Association Study Using Copy-Number Variants in Medicago truncatula. Joseph Guhlin, K. AT Silverstein, P. Zhou, A.Farmer, P. Tiffin, N. D. Young

Plant and Animal Genome Conference, San Diego, CA 2015

Genome Wide Association Study Using Copy-Number Variants in Medicago truncatula. Joseph Guhlin, K. AT Silverstein, P. Zhou, A.Farmer, P. Tiffin, N. D. Young

Plant and Animal Genome Conference, San Diego, CA 2015

Multiple Medicago assemblies Enable Analysis of Large Gene Families on a Genome Scale. P. Zhou, K. AT Silverstein, J. R. Miller, J. Mudge, R. M. Stupar, P. Tiffin, A. D. Farmer, J. Guhlin, R. Denny, N. D. Young

Plant and Animal Genome Conference, San Diego, CA 2014

ODG: A Graph Database Generator for Omics Data. J Guhlin, K. AT Silverstein, P. Zhou, S. Curtin, R. Denny, T. Wennblom, N. D. Young

Plant and Animal Genome Conference, San Diego, CA, 2014

A genome engineering toolbox for legume functional genomics Curtin SJ, Denny R, Guhlin JMichno JM, Campbell BW, Donohue RC, Cermak T, Christian M, Atkins P,Baltes N, Starker C, Zhang Y, Yiping Q, Tiffin P, Voytas DF,  Stupar RM and Young ND

Undergraduate Research Opportunities, Minneapolis, MN 2013

Prioritizing Genome Wide Association Candidates: An Informatic Approach

J Guhlin, K. AT Silverstein, N. D. Young

Student Science, Minneapolis Community and Technical College, Mpls, MN) 2010

Nickel Accumulation in Solanum lycopersicum in Hydroponic Systems, J. Guhlin

HONORS AND AWARDS

MnDRIVE Fellowship from University of Minnesota Informatics Institute 2016

Plant Biological Sciences Summer Fellowship 2015

PROFESSIONAL ACTIVITIES

Plant Biological Sciences Speaker Seminar Series Committee 2016-2017

RESEARCH EXPERIENCE

Research Assistant: Plant Biological Sciences, 2013 – Present

Medicago HapMap Project: SNP Calling, Genome Wide Association Studies, Structural Variant detection and Analysis, Informatics Support, Contact for Collaborators, Population Studies on Rhizobial Genomes

Advisor: Dr. Peter Tiffin

University of Minnesota, Minneapolis, MN